I saw Ina mentioned - I would say if you are limited on time, just go to the one on Prince St.
On the subject of consigment, check out Tokio 7 in St. Marks. Just be prepared for rudeness by the Japanese employees.
3Sixteen - Self Edge
Geller - Assembly, Odin has a wider selection I believe
And for EG, as people mentioned, don't miss Nepenthes. It's in the cut, but it's a great shop
I remember I bought a W+H tiger fleece hoodie from Memes in like, 2007. I wonder if that's...