I can definitely recommend Ginza Tailor Fukuoka in Kichijoji.
Also, in Shinjuku, where they are prepared to speak English. I just got 6 shirts and a blazer. Have had several other things made over the years.
I'm also a fan of F-1. My tastes prefer GTF shirts, but usually F-1 jackets. Only the fit - both are awesome quality and well above anything I've tried on at stores even at double the price.